EDP Sciences logo
Web of Conferences logo
Search
Menu
All issues Volume 477 (2024) E3S Web Conf., 477 (2024) 00069 References
Open Access
Issue
E3S Web Conf.
Volume 477, 2024
International Conference on Smart Technologies and Applied Research (STAR'2023)
Article Number 00069
Number of page(s) 16
DOI https://doi.org/10.1051/e3sconf/202447700069
Published online 16 January 2024
  1. T. Rinttilä, A. Kassinen, E. Malinen, L. Krogius, A. Palva. Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR. J Appl Microbiol, vol. 97, no. 6, pp. 1166-77 (2004). [CrossRef] [PubMed] [Google Scholar]
  2. F. Bäckhed, C. M. Fraser, Y. Ringel, M. E. Sanders, R. B. Sartor, P. M. Sherman, J. Versalovic, V. Young, B. B. Finlay, Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications. Cell Host Microbe, vol. 12, no. 5, pp. 611-622 (2012). [CrossRef] [PubMed] [Google Scholar]
  3. M. Toscano, R. De Grandi, E. Grossi, D. Lorenzo, Role of the human breast milk-associated microbiota on the newborns’ immune system: A mini review, Front Microbiol, vol. 25, no. 8, pp. 2100 (2017). [CrossRef] [PubMed] [Google Scholar]
  4. N. C. Aurigemma, K. J. Koltun, H. VanEvery, C. J. Rogers, M. J. De Souza, Linking the gut microbiota to bone health in anorexia nervosa, Curr Osteoporos Rep, vol. 16, no. 1, pp. 65–75 (2018). [CrossRef] [PubMed] [Google Scholar]
  5. P. Ferretti, E. Pasolli, A. Tett, F. Asnicar, V. Gorfer, S. Fedi, F. Armanini, D. T. Truong, S. Manara, M. Zolfo, F. Beghini, R. Bertorelli, V. De Sanctis, I. Bariletti, R. Canto, R. Clementi, M. Cologna, T. Crifò, G. Cusumano, S. Gottardi, C. Innamorati, C. Masè, D. Postai, D. Savoi, S. Duranti, G. A. Lugli, L. Mancabelli, F. Turroni, C. Ferrario, C. Milani, M. Mangifesta, R. Anzalone, A. Viappiani, M. Yassour, H. Vlamakis, R. Xavier, C. M. Collado, O. Koren, S. Tateo, M. Soffiati, A. Pedrotti, M. Ventura, C. Huttenhower, P. Bork, N. Segata, Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome, Cell Host Microbe, vol. 24, no. 1, pp.133–145 (2018). [CrossRef] [PubMed] [Google Scholar]
  6. M. Li, L. Yu, J. Zhao, H. Zhang, W. Chen, Q. Zhai, F. Tia, Role of dietary edible mushrooms in the modulation of gut microbiota, J Funct Foods, vol. 83, pp. 104538 (2021). [CrossRef] [Google Scholar]
  7. Y. Xi, P. F. Xu, Diabetes and gut microbiota, World J Diabetes, vol. 12, no. 10, pp. 1693-1703 (2021). [CrossRef] [PubMed] [Google Scholar]
  8. R. E. Ley, P. J. Turnbaugh, S. Klein, J. I. Gordon, Microbial ecology: human gut microbes associated with obesity, Nature, vol. 21, no. 7122, pp. 1022-3 (2006). [CrossRef] [PubMed] [Google Scholar]
  9. P. D. Cani, M. Van Hul, Gut microbiota, and obesity: causally linked? Expert Rev Gastroenterol Hepatol, vol. 14, no, 06, pp. 401–3 (2020). [CrossRef] [PubMed] [Google Scholar]
  10. I. Allali, N. Boukhatem, L. Bouguenouch, H. Hardi, H. A. Boudouaya, M. B. Cadenas, K. Ouldim, S. Amzazi, M. A. Azcarate-Peril, H. Ghazal, Gut microbiome of Moroccan colorectal cancer patients, Medi microbiol Immunol, vol. 207, no. 3-7, pp. 211-225 (2018). [CrossRef] [PubMed] [Google Scholar]
  11. G. D. Sepich-Poore, L. Zitvogel, R. Straussman, J. Hasty, J. A. Wargo, R. Knight, The microbiome and human cancer, Science, vol. 371, pp. eabc4552 (2021). [Google Scholar]
  12. J. Qin, Li Y, Z. Cai, S. Li, J. Zhu, F. Zhang, S. Liang, W. Zhang, Y. Guan, D. Shen, Y. Peng, Zhang D, Z. Jie, W. Wu, Y. Qin, W. Xue, J. Li, L. Han, D. Lu, P. Wu, Y. Dai, X. Sun, Z. Li, A. Tang, S. Zhong, X. Li, W. Chen, R. Xu, M. Wang, Q. Feng, M. Gong, J. Yu, Y. Zhang, M. Zhang, T. Hansen, G. Sanchez, J. Raes, G. Falony, S. Okuda, M. Almeida, E. LeChatelier, P. Renault, N. Pons, J. M. Batto, Z. Zhang, H. Chen, R. Yang, W. Zheng, S. Li, H. Yang, J. Wang, S. D. Ehrlich, R. Nielsen, O. Pedersen, K. Kristiansen, J. Wang, A metagenome-wide association study of gut microbiota in type 2 diabetes, Nature, vol. 490, no. 7418, pp. 55-60 (2012). [CrossRef] [PubMed] [Google Scholar]
  13. D. A. Hill, D. Artis, Intestinal bacteria and the regulation of immune cell homeostasis, Annu Rev Immunol, vol. 28, 623–67 (2010). [CrossRef] [PubMed] [Google Scholar]
  14. J. Stokholm, M. J. Blaser, J. Thorsen, M. A. Rasmussen, J. Waage, R. K. Vinding, A. M. Schoos, A. Kunøe, N. R. Fink, B. L. Chawes, K. Bønnelykke, A. D. Brejnrod, M. S. Mortensen, W. Abu Al-Soud, S. J. Sørensen, H. Bisgaard, Maturation of the gut microbiome and risk of asthma in childhood, Nat Commun, vol. 9, pp. 141 (2018). [Google Scholar]
  15. Y. J. Huang, S. Nariya, J. M. Harris, S. V. Lynch, D. F. Choy, J. R. Arron, H. Boushey, The airway microbiome in patients with severe asthma: associations with disease features and severity, J Allergy Clin Immunol, vol. 136, no. 4, pp. 874–84 (2015). [CrossRef] [PubMed] [Google Scholar]
  16. A. Y. Maigoro, S. J. N. Lee. Gut microbiome-based analysis of lipid biosynthesis in individuals with autism spectrum disorder: An in-silico evaluation, Nutrients, vol. 13, no. 2, pp. 688 (2021). [CrossRef] [PubMed] [Google Scholar]
  17. D. Goyal, S. A. Ali, R. K. Singh, Emerging role of gut microbiota in modulation of neuroinflammation and neurodegeneration with emphasis on Alzheimer’s disease, Prog Neuropsychopharmacol Biol Psychiatry, vol. 106, pp. 110112 (2021). [CrossRef] [PubMed] [Google Scholar]
  18. C. Tait, G. S. Sayuk. The brain-gut-microbiotal axis: A framework for understanding functional GI illness and their therapeutic interventions, Eur J Intern Med, vol. 84, pp. 1–9 (2021). [CrossRef] [PubMed] [Google Scholar]
  19. K. Socała, U. Doboszewska, A. Szopa, A. Serefko, M. Włodarczyk, A. Zielińska, E. Poleszak, J. Fichna, P. Wlaź, The role of microbiotagut-brain axis in neuropsychiatric and neurological disorders, Pharmacol Res, vol. 172, pp. 105840 (2021). [CrossRef] [PubMed] [Google Scholar]
  20. C. A. Lozupone, M. Hamady, S. T. Kelley, R. Knight, Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities, Appl Environ Microbiol, vol. 73, no. 5, pp. 1576-85 (2007). [CrossRef] [PubMed] [Google Scholar]
  21. K. F. Al, J. E. Bisanz, G. B. Gloor, G. Reid, J. P. Burton, Evaluation of sampling and storage procedures on preserving the community structure of stool microbiota: A simple at-home toilet-paper collection method, J Microbiol Methods, vol. 144, pp. 117-121 (2018). [CrossRef] [PubMed] [Google Scholar]
  22. T. Takagi, T. Kunihiro, S. Takahashi, T. Hisada, K. Nagashima, J. Mochizuki, K. Mizushima, Y. Naito, A newly developed solution for the preservation of short-chain fatty acids, bile acids, and microbiota in fecal specimen, J Clin Biochem Nutr, vol. 72, no. 3, pp. 263-269 (2023). [CrossRef] [PubMed] [Google Scholar]
  23. C. C. Chen, W. K. Wu, C. M. Chang, S. Panyod, T. P. Lu, J. M. Liou, Y. J. Fang, E. Y. Chuang, M. S. Wu, Comparison of DNA stabilizers and storage conditions on preserving fecal microbiota profiles, J Formos Med Assoc, vol. 119, no. 12, pp. 1791-1798 (2020). [CrossRef] [PubMed] [Google Scholar]
  24. C. Bundgaard-Nielsen, S. Hagstrøm, S. Sørensen, Interpersonal variations in gut microbiota profiles supersedes the effects of differing fecal storage conditions, Sci Rep, vol. 8, no. 1, pp. 17367 (2018). [CrossRef] [PubMed] [Google Scholar]
  25. X. M. Li, X. Shi, Y. Yao, Y. C. Shen, X. L. Wu, T. Cai, L. X. Liang, F. Wang, Effects of Stool Sample Preservation Methods on Gut Microbiota Biodiversity: New Original Data and Systematic Review with Meta-Analysis, Microbiol Spectr, vol. 11, no. 3, pp. e04297-22 (2023). [PubMed] [Google Scholar]
  26. O. Hickl, A. Heintz-Buschart, A. Trautwein-Schult, R. Hercog, P. Bork, P. Wilmes, D. Becher, Sample preservation and storage significantly impact taxonomic and functional profiles in metaproteomics studies of the human gut microbiome, Microorganisms, vol. 7, no. 9, pp. 367 (2019). [CrossRef] [PubMed] [Google Scholar]
  27. M. R. A. Sarmiento, T. O. de Paula, F. M. Borges, A. B. Ferreira-Machado, J. A. Resende, A. P. B. Moreira, S. C. P. Dutra Luquetti, D. E. Cesar, V. L. da Silva, C. G. Diniz, Obesity, xenobiotic intake and antimicrobial-resistance genes in the human gastrointestinal tract: a comparative study of eutrophic, overweight and obese individuals, Genes, vol. 10, no. 5, pp. 349 (2019). [CrossRef] [PubMed] [Google Scholar]
  28. A. Abdelmohcine, S. El Amine, K. Warda, S. El Baz, M. Khanouchi, B. El-Mansoury, M. Agnaou, K. Smimih, N. Zouhairi, H. Chatoui, A. Draoui, F. Saad, E. M. Ahmed, A. Ferssiwi, A. Bitar, A. R. Jayakumar, N. Fdil, O. El Hiba, Hyperammonemia induces gut microbiota dysbiosis and motor coordination disturbances in mice: new insight into gut-brain axis involvement in hepatic encephalopathy, Acta Neurobiol Exp, vol. 83, no. 2, pp. 203-215, (2023). [PubMed] [Google Scholar]
  29. Y. Aitbali, S. Ba-M'hamed, N. Elhidar, A. Nafis, N. Soraa, N. Bennis, Glyphosate based-herbicide exposure affects gut microbiota, anxiety and depression-like behaviors in mice, Neurotoxicol Teratol, vol. 67, pp. 44-49 (2018). [CrossRef] [PubMed] [Google Scholar]
  30. J.C. De Man, M. Rogosa, M. E. Sharpe, A medium for the cultivation of lactobacilli, J Appl Bacteriol, vol. 23, pp. 130–135 (1960). [CrossRef] [Google Scholar]
  31. L. W. Slanetz, C. H. Bartley, Numbers of enterococci in water, sewage, and feces determined by the membrane filter technique with an improved medium. J Bacteriol, vol. 74, pp. 591–595 (1957). [CrossRef] [PubMed] [Google Scholar]
  32. B. A. Kenner, H. F. Clark, P. W. Kabler, Fecal streptococci: I. Cultivation and enumeration of streptococci in surface waters, Appl Microbiol, vol. 9, pp. 15–20 (1961). [CrossRef] [PubMed] [Google Scholar]
  33. D. A. A. Mossel, I. Eelderink, M. Koopmans, F. van Rossem, Optimalisation of a MacConkey-type medium for the enumeration of Enterobacteriaceae, Lab Pract, vol. 27, pp. 1049-1050 (1978). [Google Scholar]
  34. P. B. Duke, J. D. Jarvis, The catalase test – a cautionary tale, Med Lab Technol, vol. 29, pp. 203–204 (1972). [PubMed] [Google Scholar]
  35. N. Kovacs, Identification of Pseudomonas pyocyanea by the oxidase reaction, Nature, vol. 178, pp. 703 (1956). [CrossRef] [PubMed] [Google Scholar]
  36. A. Zahri, N. Radouane, S. Ezrari, H. Nekhla, K. Tarmoun, A. Lazraq, L. El Ghadraoui, Preliminary study of the intestinal microbial diversity of three Acridoidae: Oedipoda fuscocincta, Dociostaurus moroccanus, and Calliptamus barbarus (Acrididae: Orthoptera), in the Moroccan Middle Atlas, Indian J Microbiol, vol. 62, no. 1, pp. 123-129 (2022). [CrossRef] [PubMed] [Google Scholar]
  37. X. Guo, X. Xia, R. Tang, J. Zhou, H. Zhao, K. Wang, Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs, Lett Appl Microbiol, vol. 47, pp. 367–73 (2008). [CrossRef] [PubMed] [Google Scholar]
  38. C. Zhou, J. Li, C. Guo, Z. Zhou, Z. Yang, Y. Zhang, J. Jiang, Y. Cai, J. Zhou, M. Xia, Y. Ming, Alterations in gut microbiome and metabolite profile of patients with Schistosoma japonicum infection, Parasites & Vectors, vol. 16, no. 1, pp. 346 (2023). [CrossRef] [PubMed] [Google Scholar]
  39. A. Baslam, A. Aitbaba, A. Lamrani Hanchi, Z. Tazart, R. Aboufatima, N. Soraa, M. Ait-El-Mokhtar, S. Boussaa, M. Baslam, A. Chait ,Modulation of Gut Microbiome in Ecstasy/MDMA-Induced Behavioral and Biochemical Impairment in Rats and Potential of Post-Treatment with Anacyclus pyrethrum L. Aqueous Extract to Mitigate Adverse Effects, Int J Mol Sci, vol. 24, no. 10, pp. 9086 (2023). [CrossRef] [PubMed] [Google Scholar]
  40. N. E. Kaikai, S. Ba-M Hamed, A. Slimani, I. Dilagui, A. Lamrani Hanchi, N. Soraa, N. E. Mezrioui, M. Bennis, A. Ghanima, Chronic exposure to metam sodium-based pesticide in mice during adulthood elevated anxiety and depression-like behaviors: Involvement of serotoninergic depletion and gut microbiota dysbiosis, Environ Toxicol Pharmacol, vol. 98, pp. 104066 (2023). [CrossRef] [PubMed] [Google Scholar]
  41. F. Raji, K. Hattoufi, H. Tligui, S. El Ftouh, J. Heikel, H. Aguenaou, A. Barkat, Establishment of Gut Microbiota in a group preterm Moroccan Newborns and association with Birth Delivery mode, ZHYSZZ, vol. 53, pp. 02 (2023). [Google Scholar]
  42. S. Sehli, A. Idrissi Azami, N. Dini, N. Habib, B. Chaouni, S. Hamdi, N. Al Idrissi, S. Amzazi, I. Allali, C. Nejjari, H. Ghazal, Gut Microbiome 16S rRNA Gene Amplicon Taxonomic Profiling of Hospitalized Moroccan COVID-19 Patients, Microbiol Resour Announc, vol. 11, no. 7, pp. e00256-22 (2022). [CrossRef] [PubMed] [Google Scholar]
  43. R. Blekhman, K. Tang, E. A. Archie, L. B. Barreiro, Z. P. Johnson, M. E. Wilson, J. Kohn, M. L. Yuan, L. Gesquiere, L. E. Grieneisen, J. Tung, Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data, Sci rep, vol. 6, no. 1, pp. 31519 (2016). [CrossRef] [PubMed] [Google Scholar]
  44. Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima JR, Prifti E, Nielsen T, Juncker AS, Manichanh C, Chen B, Zhang W, Levenez F, Wang J, Xu X, Xiao L, Liang S, Zhang D, Zhang Z, Chen W, Zhao H, AlAama JY, Edris S, Yang H, Wang J, Hansen T, Nielsen HB, Brunak S, Kristiansen K, Guarner F, Pedersen O, Doré J, Ehrlich SD, Bork P, Wang J, MetaHIT Consortium, An integrated catalog of reference genes in the human gut microbiome, Nat Biotechnol, vol. 32, pp. 834–841 (2014). [CrossRef] [PubMed] [Google Scholar]
  45. The Human Microbiome Project Consortium, Structure, function and diversity of the healthy human microbiome, Nature, vol. 486, pp. 207–214 (2012). [CrossRef] [PubMed] [Google Scholar]
  46. J. Qin, Y. Li, Z. Cai, S. Li, J. Zhu, F. Zhang, S. Liang, W. Zhang, Y. Guan, D. Shen, Y. Peng, D. Zhang, Z. Jie, W. Wu, Y. Qin, W. Xue, J. Li, L Han, D. Lu, P. Wu, Y. Dai, X. Sun, Z. Li, A. Tang, S. Zhong, X. Li, W. Chen, R. Xu, M. Wang, Q. Feng, M. Gong, J. Yu, Y. Zhang, M. Zhang, T. Hansen, G. Sanchez, J. Raes, G. Falony, S. Okuda, M. Almeida, E. LeChatelier, P. Renault, N. Pons, J. M. Batto, Z. Zhang, H. Chen, R. Yang, W. Zheng, S. Li, H. Yang, J. Wang, S. Dusko Ehrlich, R. Nielsen, O. Pedersen, K. Kristiansen, J. Wang, A metagenome-wide association study of gut microbiota in type 2 diabetes, Nature, vol. 490, pp. 55–60 (2012). [CrossRef] [PubMed] [Google Scholar]
  47. J. Palmu, A. Salosensaari, A. S. Havulinna, S. Cheng, M. Inouye, M. Jain, T. J. Niiranen, Association between the gut microbiota and blood pressure in a population cohort of 6953 individuals, J Am Heart Assoc, vol. 9, no. 15, pp. e016641 (2020). [Google Scholar]
  48. C. Wan, C. Zhu, G. Jin, M. Zhu, J. Hua, Y. He, Analysis of gut microbiota in patients with coronary artery disease and hypertension, Evid Based Complement Alternat Med, vol. 2021, pp. 1-9 (2021). [Google Scholar]
  49. B. Huang, S. W. H. Chau, Y. Liu, J. W. Y. Chan, J. Wang, S. L. Ma, J. Zhang, P. K. S. Chan, Y. K. Yeoh, Z. Chen, L. Zhou, S. H. Wong, V. C. T. Mok, K. F. To, H. M. Lai, S. Ng, C. Trenkwalder, F. K. L. Chan, Y. K. Wing, Gut microbiome dysbiosis across early Parkinson’s disease, REM sleep behavior disorder and their first-degree relatives, Nat Commun, vol. 14, no. 1, pp. 2501 (2023). [Google Scholar]

Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.

Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.

Initial download of the metrics may take a while.